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| config | OK | NOTE | WARNING | ERROR | FAILURE | FAIL |
|---|---|---|---|---|---|---|
| bioc-checks | 4 | 684 | 905 | 1305 | 12 | 1 |
| linux-devel-arm64 | 118 | 229 | 135 | 34 | 0 | 2 |
| linux-devel-x86_64 | 907 | 1302 | 518 | 182 | 0 | 2 |
| linux-release-arm64 | 124 | 228 | 134 | 30 | 0 | 2 |
| linux-release-x86_64 | 935 | 1304 | 510 | 158 | 0 | 3 |
| macos-oldrel-arm64 | 740 | 1082 | 428 | 180 | 0 | 43 |
| macos-oldrel-x86_64 | 115 | 195 | 143 | 34 | 0 | 30 |
| macos-release-arm64 | 755 | 1109 | 428 | 166 | 0 | 17 |
| macos-release-x86_64 | 122 | 208 | 144 | 31 | 0 | 12 |
| source | 2765 | 0 | 0 | 189 | 0 | 0 |
| wasm-release | 2408 | 0 | 0 | 0 | 0 | 70 |
| windows-devel-arm64 | 111 | 208 | 135 | 47 | 0 | 16 |
| windows-devel-x86_64 | 733 | 1087 | 435 | 203 | 0 | 20 |
| windows-oldrel-x86_64 | 741 | 1069 | 435 | 187 | 1 | 44 |
| windows-release-arm64 | 118 | 200 | 141 | 42 | 0 | 16 |
| windows-release-x86_64 | 756 | 1085 | 433 | 183 | 0 | 21 |
A package propagates when all of the following hold. R 4.6 is the gating R for bioc, resolved from config.yaml at evaluate time — the bioc→R mapping shifts with the R release cycle.
_status is success and the build reported at least one job.ERROR, FAIL and FAILURE
(NOTE and WARNING pass). Gating jobs run R 4.6.x on:
source + linux x86_64, windows x86_64, macOS arm64 — matching what production BBS
tests.Only the passing architectures propagate. The source tarball always rides with an eligible
package; binaries for a failing architecture are simply not available until a later version passes
there. The passing set is recorded per entry in the index (archs).
Advisory, never blocking: BiocCheck (bioc-checks) and wasm, plus other R
lines, arm64 linux, macOS x86_64 and windows arm64. These are tracked and the BiocCheck verdict is
recorded in the index, but they cannot stop propagation — mirroring BBS, which excludes BiocCheck from
the propagation decision. Most ERRORs in the table above are BiocCheck.
BAGS, BP4RNAseq, BeadArrayUseCases, BiocSet, CENTREprecomputed, COMPASS, ChIPComp, ChIPXpressData, CytoMethIC, ELMER, GOfuncR, HMP2Data, HiCDataHumanIMR90, KnowSeq, MetaProViz, OSCA.advanced, OSCA.basic, OSCA.intro, OSCA.workflows, OSTA, RTCGA.CNV, RTCGA.PANCAN12, RTCGA.RPPA, RTCGA.clinical, RTCGA.mRNA, RTCGA.methylation, RTCGA.miRNASeq, RTCGA.mutations, RTCGA.rnaseq, SVMDO, SingleMoleculeFootprinting, TCGAWorkflow, VaSP, adductomicsR, artMS, beer, consensusDE, csawBook, curatedMetagenomicData, customProDB, cytofWorkflow, decoupleR, dorothea, fluentGenomics, healthyControlsPresenceChecker, iBBiG, linkSet, lipidr, moanin, mosbi, netZooR, pgxRpi, randRotation, rqubic, runibic, signifinder, simpleSingleCell, smokingMouse, stJoincount, tidytof, wppi
| config | OK | NOTE | WARNING | ERROR | FAILURE | FAIL |
|---|---|---|---|---|---|---|
| bioc-checks | 1 | 862 | 704 | 1282 | 13 | 0 |
| linux-devel-arm64 | 92 | 249 | 134 | 30 | 0 | 2 |
| linux-devel-x86_64 | 801 | 1347 | 511 | 202 | 0 | 1 |
| linux-release-arm64 | 100 | 247 | 138 | 20 | 0 | 2 |
| linux-release-x86_64 | 830 | 1354 | 514 | 163 | 0 | 1 |
| macos-oldrel-arm64 | 656 | 1128 | 408 | 167 | 0 | 62 |
| macos-oldrel-x86_64 | 98 | 206 | 141 | 23 | 0 | 38 |
| macos-release-arm64 | 659 | 1156 | 420 | 170 | 0 | 16 |
| macos-release-x86_64 | 99 | 227 | 145 | 20 | 0 | 14 |
| source | 2729 | 0 | 0 | 166 | 0 | 0 |
| wasm-release | 2352 | 0 | 0 | 0 | 0 | 71 |
| windows-devel-arm64 | 89 | 219 | 134 | 43 | 0 | 20 |
| windows-devel-x86_64 | 629 | 1141 | 421 | 213 | 1 | 17 |
| windows-oldrel-x86_64 | 650 | 1120 | 421 | 180 | 1 | 51 |
| windows-release-arm64 | 96 | 217 | 143 | 30 | 0 | 20 |
| windows-release-x86_64 | 651 | 1147 | 427 | 180 | 0 | 18 |
A package propagates when all of the following hold. R 4.6 is the gating R for bioc-release, resolved from config.yaml at evaluate time — the bioc→R mapping shifts with the R release cycle.
_status is success and the build reported at least one job.ERROR, FAIL and FAILURE
(NOTE and WARNING pass). Gating jobs run R 4.6.x on:
source + linux x86_64, windows x86_64, macOS arm64 — matching what production BBS
tests.Only the passing architectures propagate. The source tarball always rides with an eligible
package; binaries for a failing architecture are simply not available until a later version passes
there. The passing set is recorded per entry in the index (archs).
Advisory, never blocking: BiocCheck (bioc-checks) and wasm, plus other R
lines, arm64 linux, macOS x86_64 and windows arm64. These are tracked and the BiocCheck verdict is
recorded in the index, but they cannot stop propagation — mirroring BBS, which excludes BiocCheck from
the propagation decision. Most ERRORs in the table above are BiocCheck.
BP4RNAseq, BPRMeth, BiRewire, BubbleTree, CENTREprecomputed, ChIPXpressData, CytoMethIC, DeconRNASeq, GEOexplorer, HD2013SGI, HMP2Data, HiBED, IMAS, MetaNeighbor, MineICA, OMA, OSCA.advanced, OSCA.intro, OSCA.multisample, OSCA.workflows, OSTA, Organism.dplyr, RcisTarget, RforProteomics, RgnTX, RiboProfiling, SGCP, SQLDataFrame, SigFuge, TCGAWorkflow, barcodetrackR, biodbChebi, consensusDE, csawBook, cummeRbund, cytofWorkflow, debCAM, dorothea, granulator, hca, macrophage, mfa, microSTASIS, motifbreakR, netZooR, receptLoss, simpleSingleCell, soGGi, spatzie, tidytof